rs28147122 SNP Detail

Summary

• ID
  rs28147122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGAAGCCA TTGTTAGCAA ACAGTACAGA GTATCTTGTG
  CCATCTCAGT TTCTCTCGGT AGCCTATGAG TTTATACAGA GTGAGCAAGA CACCATGTCT
  R
  CCTCTGCCTT CCTAGGGTGT TGAATGTTAG CATTGTAAAA AAGCTGTTAG CACTACTCAC
  CTAGGTTTTT GATGAGGCCA AAAGTAATCA GAGAGAGGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285746	NES09489104	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28147122					SNP	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285746	NES09489104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	1376 bp proximal
Ndc1	NDC1 transmembrane nucleoporin	1826 bp upstream
Rr367664	regulatory region 367664	1366 bp upstream
Rr596979	regulatory region 596979	1078 bp proximal
Rr596980	regulatory region 596980	1147 bp proximal
Rr596981	regulatory region 596981	1574 bp proximal
Rr596982	regulatory region 596982	1619 bp proximal
Tssr38245	transcription start site region 38245	1508 bp upstream
Tssr38246	transcription start site region 38246	1536 bp upstream
Tssr38247	transcription start site region 38247	1783 bp upstream
Tssr38248	transcription start site region 38248	1818 bp upstream
Tssr38249	transcription start site region 38249	1840 bp upstream
Tssr38250	transcription start site region 38250	1854 bp upstream