rs28147120 SNP Detail

Summary

• ID
  rs28147120
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTGTGC CATCTCAGTT
  TCTCTCGGTA GCCTATGAGT TTATACAGAG TGAGCAAGAC ACCATGTCTA CCTCTGCCTT
  CCTAGGGTGT TGAATGTTAG CATTGTAAAA AAGCTGTTAG CACTACTCAC CTAGGTTTTT
  GATGAGGCCA AAAGTAATCA GAGAGAGGAA TTTGAGCCAG TGAGAAGTTG TATGTGTGCA
  K
  GTTTGTGTTT GTATGTGTGC ACATTTGTGC ATGTGGGTGT GGAAGCCAGA AGTCTACTTT
  GTGTGTTGTT CCTCAGGCTC CCTCCACCTT GTTTCTCCCA AGTGCCTACA GCTCAGAGTA
  GGCTTGGCTC ACTAGCTATA AGCCTCATAG AGCTCCCTAT CTCTGCCTGC TCAACACCTG
  CCCACCTGCC CAGCACCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285744	NES09489107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28147120					SNP	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285744	NES09489107	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223549 () rs orientation: forward

Symbol	Name	Function Class
Ndc1	NDC1 transmembrane nucleoporin	1695 bp upstream
Rr367664	regulatory region 367664	1235 bp upstream
Rr596979	regulatory region 596979	947 bp proximal
Rr596980	regulatory region 596980	1016 bp proximal
Rr596981	regulatory region 596981	1443 bp proximal
Rr596982	regulatory region 596982	1488 bp proximal
Rr596983	regulatory region 596983	1932 bp proximal
Tssr38245	transcription start site region 38245	1377 bp upstream
Tssr38246	transcription start site region 38246	1405 bp upstream
Tssr38247	transcription start site region 38247	1652 bp upstream
Tssr38248	transcription start site region 38248	1687 bp upstream
Tssr38249	transcription start site region 38249	1709 bp upstream
Tssr38250	transcription start site region 38250	1723 bp upstream
Tssr38251	transcription start site region 38251	1969 bp upstream