rs28147119 SNP Detail

Summary

• ID
  rs28147119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107223926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCCACC TGCCCAGCAC
  CTGCCCAGCA CCTGCCTAGC ACCTGCCTAG CACCTGCCCA GCACCTGCCT AGCACCTGCC
  TAGCACCTGC CCAGCACCTG CCTAGCACCT GCCCAGCACC TGCCTAGCAC CTGCCCAGCA
  CCTGCCCAGC ACCTGCCCAG CACCTGCCTA GCACCTGTCC AGCACCATGT TCAGGTTTTC
  Y
  TCCTGGAGTC CAGGTACTGA ATTCTTGTCT TCATGCTTAT GTAGCTAGCT GAGCTACCTC
  TCCACCAATG GTAATCTTCT TTTTGGAGAC AGCTGTTTCA CATATTCCAG ACTAGTCTCA
  AACTCACTAG CTAAGGATGG CTTTGAGCTT TATAGCCTCC TGCCTCAGTT TCTTGAGTGC
  TGCCATGTTT TGGGAGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285743	NES09489006	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28147119					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285743	NES09489006	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107223926 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	868 bp proximal
Ndc1	NDC1 transmembrane nucleoporin	1318 bp upstream
Rr367664	regulatory region 367664	858 bp upstream
Rr596979	regulatory region 596979	570 bp proximal
Rr596980	regulatory region 596980	639 bp proximal
Rr596981	regulatory region 596981	1066 bp proximal
Rr596982	regulatory region 596982	1111 bp proximal
Rr596983	regulatory region 596983	1555 bp proximal
Tssr38245	transcription start site region 38245	1000 bp upstream
Tssr38246	transcription start site region 38246	1028 bp upstream
Tssr38247	transcription start site region 38247	1275 bp upstream
Tssr38248	transcription start site region 38248	1310 bp upstream
Tssr38249	transcription start site region 38249	1332 bp upstream
Tssr38250	transcription start site region 38250	1346 bp upstream
Tssr38251	transcription start site region 38251	1592 bp upstream