rs28147118 SNP Detail

Summary

• ID
  rs28147118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107224286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCAGT TTCTTGAGTG
  CTGCCATGTT TTGGGAGGTG CTGTAGGGTT TGGTATATAT CAGGAAAGCA TTTTACAACT
  CAGTCACACC CCAGCCTTCA ATAGTTGTCT TATAGTATAT AGTATTTACA TCTTTACCCC
  ATTAACAGGA TGTTGTGTTT TTATCCTTAT TTTACACTTG AAGAAATAGA GGCTCTGTGA
  R
  GATCAAGATG CTGCACTTAA CAAGTATTAA TAGCTGAAGC TAAAAACCAA AACATACCTT
  TCTTATCAAT AAAACACTTT ATTTTTAATA AAAGGAATTC AGTGAAGTTA CTGAGTATTA
  AGACGGCAGC TTCAGTATCC TGTGGTTTCA CTTTTAGAAA GATGCCATTC TGGGCTGAAG
  AGATGGCTCA ACTCTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38285742	NES09488939	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28147118					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38285742	NES09488939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107224286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14540	CpG island 14540	508 bp proximal
Ndc1	NDC1 transmembrane nucleoporin	958 bp upstream
Rr367664	regulatory region 367664	498 bp upstream
Rr596979	regulatory region 596979	210 bp proximal
Rr596980	regulatory region 596980	279 bp proximal
Rr596981	regulatory region 596981	706 bp proximal
Rr596982	regulatory region 596982	751 bp proximal
Rr596983	regulatory region 596983	1195 bp proximal
Tssr38245	transcription start site region 38245	640 bp upstream
Tssr38246	transcription start site region 38246	668 bp upstream
Tssr38247	transcription start site region 38247	915 bp upstream
Tssr38248	transcription start site region 38248	950 bp upstream
Tssr38249	transcription start site region 38249	972 bp upstream
Tssr38250	transcription start site region 38250	986 bp upstream
Tssr38251	transcription start site region 38251	1232 bp upstream