rs28146779 SNP Detail

Summary

• ID
  rs28146779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107779203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACAGACGT TTGTGCTGTG GACAAGACTA AACTATGTTG
  AATATTCTTA CAGTTTTCCA ATTCTAAACT ACCGACAGTC CACCTGATCT TAAACCTGGG
  K
  AAGGCACAGG CCTGCCTGAA AGTCAGTGCC CATCTGACTC AGCAAATGAA AACTCTCTTT
  CCCAAGCCCT CACCTTTCCC CTACATATTA ATGCAGCTCA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
ss38282699	NES09523372	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ
rs28146779					SNP	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282699	NES09523372	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107779203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14548	CpG island 14548			1232 bp proximal
Cpt2	carnitine palmitoyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr597091	regulatory region 597091			within coordinates
Rr597092	regulatory region 597092			1544 bp proximal
Rr597093	regulatory region 597093			1596 bp proximal
Tssr42698	transcription start site region 42698			1473 bp downstream
Tssr42699	transcription start site region 42699			1502 bp downstream
Tssr42700	transcription start site region 42700			1513 bp downstream