rs28146769 SNP Detail

Summary

• ID
  rs28146769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107780221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGGTAA AGGTGAATAG
  GGGACACTGA CCCGAGGGAG ACCCATGTTA GGAACTGGCT ATCCTCCCTC AATGGGGGTG
  CCCTATATCT TTAATCTCAG CACTCTACAG GCAGAAGCAA GAGGATCTCT AATAGGCCAT
  CCTGGTCTAC AGAGCTAGTT CTAGGGCACA CAAACCCTCA AAACAAAACA AGGAATTGAC
  Y
  ACCCTAGTAG AAAGGATTCG GGTGATTTTC AGGCATTAAG TGTGTAGGGC TCAGGATAGC
  TGTCTGAAAG ATTAATGGAG CGGGCAGGAG TTTGTAGGAT TCAAGATGAA CTTGTAGACG
  GGAGGGTTGC GGAGGAGACT TTAAAGTTTC TGAATCTTCT GAGCCAGGGA ATTTTCAAAG
  TCTCAGGCTT TCCAAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282689	NES09523254	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28146769					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282689	NES09523254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107780221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14548	CpG island 14548			214 bp proximal
Cpt2	carnitine palmitoyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr597091	regulatory region 597091			571 bp distal
Rr597092	regulatory region 597092			526 bp proximal
Rr597093	regulatory region 597093			578 bp proximal
Tssr42698	transcription start site region 42698			455 bp downstream
Tssr42699	transcription start site region 42699			484 bp downstream
Tssr42700	transcription start site region 42700			495 bp downstream