rs28146637 SNP Detail

Summary

• ID
  rs28146637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102619249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGATTC TATGGTTAAA
  TCAATTTTAG TTAATTCCAA ATGAATGTAA TCTTTGACTA GCAAGGCAAG ATAAACAGAA
  AAAGTGTAAC TTACATACTT TTTAATTCAA AGCCCACAAG ACTTATCCTC ATCAGGAAAA
  AAAAAAAGAT AACTTGTCTA TAGAAGGGTA CTATTTTTAT AGCTAAATTT GACAAAGGAC
  R
  TGTTGAAATG CATCTGCATA CATTCTGATT CAGTTCTAAT CTTCCATGGG AAATTTGAGG
  ACCGTTTCTT TCACTTCTGG GCTTGAAACT ATCCCATGAG TTCTTTGGAG GTTGGTAGCA
  TTTCCTGATG ATCACTAGTG GTTCTCCTGG TAATCAGGTC TGTTGTGCCA TCCGGAACAT
  CAGCTTGAAG GCCTAAGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38307559	NES09535310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28146637					SNP	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38307559	NES09535310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102619249 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596308	regulatory region 596308			1517 bp distal
Rr596309	regulatory region 596309			1029 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1			Intron
				Noncoding-Transcript-Variant
Tssr38069	transcription start site region 38069			1868 bp downstream
Tssr38070	transcription start site region 38070			1774 bp downstream
Tssr38071	transcription start site region 38071			1677 bp downstream