rs28145873 SNP Detail

Summary

• ID
  rs28145873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:90059489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAAAGAC TTCCACATGG
  TGGCAGTAAG TAGCTACTGC ATTTCACTGA AAGAACTGGC AAGTGCCTTG TATCACAGTG
  CAATGGAAAT CTCTGGTGTA CCAAGTTAAG TGACTGATAA GATTATATTC TAGGGAATTC
  AGAATTCTGG TGGAAAATCC ATCTTCAAGT GCCCTCTGAG ACCATCCACT GGAATACAAG
  Y
  TACAACTCCG GTTATACAGC AAAATCACCT GGTATCCCCA GTGAGGATGT TAAAACACTG
  TACTATCTAG CTATGCTTAC TTTCCAGCAA TGCTGTAGAC AAATTCGTGC ATAGCTCTTT
  GGGTGCTGGT CTCATGCTTT GCGCTTCTCA TGAAGTTTTC TCTGGATTTG AAACATGTCT
  CTGTTTCATC ACATGACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38272695	NES09562471	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28145873					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38272695	NES09562471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:90059489 () rs orientation: forward

Symbol	Name	Function Class
Rr595232	regulatory region 595232	36 bp distal
Rr595233	regulatory region 595233	171 bp distal