rs28145869 SNP Detail

Summary

• ID
  rs28145869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:90059721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCCCCAG TGAGGATGTT
  AAAACACTGT ACTATCTAGC TATGCTTACT TTCCAGCAAT GCTGTAGACA AATTCGTGCA
  TAGCTCTTTG GGTGCTGGTC TCATGCTTTG CGCTTCTCAT GAAGTTTTCT CTGGATTTGA
  AACATGTCTC TGTTTCATCA CATGACTAAA TTCTACTCTT CATACAAGAT ATTCTAATGA
  R
  GACTACTCTT CCGAATCTCA ATTAGGTATT CCTTATATGA ATGCCTATTT AGCCATATAC
  TCACCCTCTA ATCAAATGTC TGTTACTTGA CATTCTCCTA ATGTGAGAGT TTACCTAAGA
  GATTTTAAAT CTAAGCGCTC TCAACATCTG TGAGAGATTA TATTTTTTCA TTTGTTTTGT
  TTATTTTTTT AACATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38272691	NES09562475	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28145869					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38272691	NES09562475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:90059721 () rs orientation: forward

Symbol	Name	Function Class
Rr595232	regulatory region 595232	268 bp distal
Rr595233	regulatory region 595233	403 bp distal