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rs28145069 SNP Detail
Summary
  • ID
    rs28145069
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:89332833 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTTTGCAAC AGTGACCTCC
    ATCCTTGGTG ACTTTGAGAC TTCCCCAACT CTGTCCAATA ATCACTGTTC TTCCCTTTGG
    CCCCATTGTA ACAGCTAGCA CATCTGCTAA CAGGTCTACA TTCTGAAGCG TTAAGGCTCG
    AACATCCACA CCAAATTTTA CATCTTTGGC ATAGGATCCA GTGAGAGGAA GAGCCAGGCG
    Y
    GCAGGACTCT GGTCTCATCT GGCAAAGGAC TGTGGGTAAT CGAAGCACTT CTGAGAGGCA
    GTGGTGGGAG CGCACATAGT GAGGCAGGCT TTCAGTTGCC AGTGAGGACT AAATTTGGTT
    TTTGTATGTT GGAAGTTGAA CCTCATGCAT GCCAAGCACA TATAGAGCTC AGGCTTCACT
    GGTGTTATAT ATTATGACAT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38274790 NES09578149 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28145069 SNP C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38274790 NES09578149 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:89332833 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm12608 predicted gene 12608 within coordinates
Gm12610 predicted gene 12610 within coordinates
Gm55777 predicted gene, 55777 623 bp upstream
Rr1238 regulatory region 1238 within coordinates
Rr1239 regulatory region 1239 1486 bp proximal
Rr376812 regulatory region 376812 within coordinates
Rr595201 regulatory region 595201 385 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory