ACTTTGCAAC AGTGACCTCC ATCCTTGGTG ACTTTGAGAC TTCCCCAACT CTGTCCAATA ATCACTGTTC TTCCCTTTGG CCCCATTGTA ACAGCTAGCA CATCTGCTAA CAGGTCTACA TTCTGAAGCG TTAAGGCTCG AACATCCACA CCAAATTTTA CATCTTTGGC ATAGGATCCA GTGAGAGGAA GAGCCAGGCG Y GCAGGACTCT GGTCTCATCT GGCAAAGGAC TGTGGGTAAT CGAAGCACTT CTGAGAGGCA GTGGTGGGAG CGCACATAGT GAGGCAGGCT TTCAGTTGCC AGTGAGGACT AAATTTGGTT TTTGTATGTT GGAAGTTGAA CCTCATGCAT GCCAAGCACA TATAGAGCTC AGGCTTCACT GGTGTTATAT ATTATGACAT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38274790 | NES09578149 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | T | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs28145069 | SNP | C | C | C | C | C | C | C | C | C | C | T | C | C | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38274790 | NES09578149 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:89332833 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm12608 | predicted gene 12608 | within coordinates | ||||||
Gm12610 | predicted gene 12610 | within coordinates | ||||||
Gm55777 | predicted gene, 55777 | 623 bp upstream | ||||||
Rr1238 | regulatory region 1238 | within coordinates | ||||||
Rr1239 | regulatory region 1239 | 1486 bp proximal | ||||||
Rr376812 | regulatory region 376812 | within coordinates | ||||||
Rr595201 | regulatory region 595201 | 385 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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