rs28145067 SNP Detail

Summary

• ID
  rs28145067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89332910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCCATT GTAACAGCTA
  GCACATCTGC TAACAGGTCT ACATTCTGAA GCGTTAAGGC TCGAACATCC ACACCAAATT
  TTACATCTTT GGCATAGGAT CCAGTGAGAG GAAGAGCCAG GCGCGCAGGA CTCTGGTCTC
  ATCTGGCAAA GGACTGTGGG TAATCGAAGC ACTTCTGAGA GGCAGTGGTG GGAGCGCACA
  Y
  AGTGAGGCAG GCTTTCAGTT GCCAGTGAGG ACTAAATTTG GTTTTTGTAT GTTGGAAGTT
  GAACCTCATG CATGCCAAGC ACATATAGAG CTCAGGCTTC ACTGGTGTTA TATATTATGA
  CATTCTGCTC ATTTATAATG TAGTCCACTT TAGTCTAAAA CCTAGGGAAG TAGTCACAGA
  GTTTGAACAG CCCGTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38274788	NES09578151	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	T	T	C	C	C	T	C	T
ss45590484	mCV23961277	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss146949772	ENSMUSSNP335084	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28145067					SNP	C	T	T	T	T	T	T	C	T	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274788	NES09578151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89332910 () rs orientation: forward

Symbol	Name	Function Class
Gm12608	predicted gene 12608	29 bp upstream
Gm12610	predicted gene 12610	within coordinates
Gm55777	predicted gene, 55777	546 bp upstream
Rr1238	regulatory region 1238	within coordinates
Rr1239	regulatory region 1239	1409 bp proximal
Rr376812	regulatory region 376812	within coordinates
Rr595201	regulatory region 595201	308 bp proximal