rs28145062 SNP Detail

Summary

• ID
  rs28145062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89333210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGTGTT ATATATTATG
  ACATTCTGCT CATTTATAAT GTAGTCCACT TTAGTCTAAA ACCTAGGGAA GTAGTCACAG
  AGTTTGAACA GCCCGTTAAA ATGGCATTTA AGTAGACACA AAGTTAAGTA TACCAGTACA
  GTGTTCCTTT GATGTGGGAA TTAAAAATGG GGTGGGAGAC TTCACCTGGA AAATGAAGAC
  K
  AAGTTCTTGG TGCTATGAGA AAAGTAAAAC AGGGAAGACA AAAATGGAAA TTGCTCACCC
  ATTTGCAAGT TACAGGAAGA GGCAGGTTAC AGTTCATAGC ATCTCTAATC TCAGGGTGAT
  TGGTCTCAGA GAATGAACCA CACAAATAGG AAAAAGCAAA ACAAAACAAC AACAACAACA
  AAAACCAGGG AGTGACTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38274783	NES09578156	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28145062					SNP	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274783	NES09578156	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89333210 () rs orientation: forward

Symbol	Name	Function Class
Gm12608	predicted gene 12608	329 bp upstream
Gm12610	predicted gene 12610	within coordinates
Gm55777	predicted gene, 55777	246 bp upstream
Rr1238	regulatory region 1238	within coordinates
Rr1239	regulatory region 1239	1109 bp proximal
Rr376812	regulatory region 376812	within coordinates
Rr595201	regulatory region 595201	8 bp proximal