rs28145060 SNP Detail

Summary

• ID
  rs28145060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89333420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTATGAG AAAAGTAAAA
  CAGGGAAGAC AAAAATGGAA ATTGCTCACC CATTTGCAAG TTACAGGAAG AGGCAGGTTA
  CAGTTCATAG CATCTCTAAT CTCAGGGTGA TTGGTCTCAG AGAATGAACC ACACAAATAG
  GAAAAAGCAA AACAAAACAA CAACAACAAC AAAAACCAGG GAGTGACTCA GCTCTAGCTC
  R
  GGTTGCTTCT GCGCCTGGCA TGACCTCTGC TGTTGTCCTC GGACCTTGCT TCCCTCCTCC
  TCTGTCGTTG TGGAGAAACA GGAAGGAATG TTTATTAACA AGGCTGGCTG GGGCCACACC
  CAAAGCAATA TCAGAGTTTT ACCTCTCCTG GGCCTGGGAA GAGGTCCAAA GATCAAGGGC
  AGCTTCTGGT TTGTATGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38274781	NES09578158	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	A	G
ss45717805	mCV23961275	ABI	CRAMUS_MOUSE	f	SNP	G	A					A	A
ss146949786	ENSMUSSNP2714921	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28145060					SNP	G	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274781	NES09578158	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89333420 () rs orientation: forward

Symbol	Name	Function Class
Gm12608	predicted gene 12608	539 bp upstream
Gm12610	predicted gene 12610	within coordinates
Gm55777	predicted gene, 55777	36 bp upstream
Rr1238	regulatory region 1238	within coordinates
Rr1239	regulatory region 1239	899 bp proximal
Rr376812	regulatory region 376812	within coordinates
Rr595201	regulatory region 595201	within coordinates