rs28145058 SNP Detail

Summary

• ID
  rs28145058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89333488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCAGGT TACAGTTCAT
  AGCATCTCTA ATCTCAGGGT GATTGGTCTC AGAGAATGAA CCACACAAAT AGGAAAAAGC
  AAAACAAAAC AACAACAACA ACAAAAACCA GGGAGTGACT CAGCTCTAGC TCAGGTTGCT
  TCTGCGCCTG GCATGACCTC TGCTGTTGTC CTCGGACCTT GCTTCCCTCC TCCTCTGTCG
  Y
  TGTGGAGAAA CAGGAAGGAA TGTTTATTAA CAAGGCTGGC TGGGGCCACA CCCAAAGCAA
  TATCAGAGTT TTACCTCTCC TGGGCCTGGG AAGAGGTCCA AAGATCAAGG GCAGCTTCTG
  GTTTGTATGA GGCAAGAGCA AACTTAGAGA ATATACTGCT TTTTTTTTTT TTGAGCCTTG
  ACAGATGGTC TGCTGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38274779	NES09578160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28145058					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274779	NES09578160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89333488 () rs orientation: forward

Symbol	Name	Function Class
Gm12608	predicted gene 12608	607 bp upstream
Gm12610	predicted gene 12610	within coordinates
Gm55777	predicted gene, 55777	Noncoding-Transcript-Variant
Rr1238	regulatory region 1238	within coordinates
Rr1239	regulatory region 1239	831 bp proximal
Rr376812	regulatory region 376812	within coordinates
Rr595201	regulatory region 595201	within coordinates