GCTTGTAACA GGTCACCAGA ACCGTAATCC CCAAGGAGCT TTGCCCAAGA TGATGGAAGA GCAATGGTTC ACTCTCAGGG TTGTGTCTCC GTGGCAGATG TCTTTCACTG CGGGGTTAGC ACCCCAGCTG GGATCCTCAG GTCCCTTATC AACAGCCTTT CCCATTTTAT CTTCCAGTCC AATCTTGTAC TCGTATCTTA Y GGGCTCCAGT AATGGGTCAC ACCTTATGTG CTTGAGAGGG GAGGGGAGAA GGTTGAGCAG AGAGGAAGTA AAGAGATAAG GGGACAGGAG ACAGAGATAC ACAGAGACAC AGAGACACAC AGCGAGAAAT AGAAACAGAG AGAGGGGAAC AGAGAGAGAC AAAGGCAGAG AGTCAAAGAC AGAGAGAGAC AGTGAGCAAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38274772 | NES09578167 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs28145051 | SNP | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38274772 | NES09578167 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr4:89333920 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm12608 | predicted gene 12608 | 1039 bp upstream | ||||||
Gm12610 | predicted gene 12610 | within coordinates | ||||||
Gm55777 | predicted gene, 55777 | 316 bp downstream | ||||||
Rr1238 | regulatory region 1238 | within coordinates | ||||||
Rr1239 | regulatory region 1239 | 399 bp proximal | ||||||
Rr376812 | regulatory region 376812 | 31 bp downstream | ||||||
Rr595201 | regulatory region 595201 | within coordinates | ||||||
Tssr1229 | transcription start site region 1229 | 1668 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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