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rs28143467 SNP Detail
Summary
  • ID
    rs28143467
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:102341511 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTGCTGGAG TTTAAGACGT
    TGGCTGTATG GCCACTCTTT AAAGTATTCT GCTGGTTTAC TATGGAAAGG CTATGAACAT
    GTACACCAAA ATGAATAATA ATGATACCGT TTTACATGGA ATTTAGAAGT TCACTTGTAG
    GCTTTGGCTG ACCCCAGTTT CACCATTTAA GAACCTGCCC TCTTTGCCAT TAAGAAGAAT
    Y
    CAGAAGGTTG GAGAGATGGC TCAGTGCTTA AGAGTGCCAG CTACCCTTTC AAAGGTCCCA
    AGTTTGATTC CCAGCACCCA CAAGGTAGCT TTTACCCATC TGTAACTCTG CTCTCTTCTG
    GCCTCCAGGG GAAGGGCCAT GCATGTAATG CAATACATAT GAACAGGCTA ATACACATAC
    AAATAAATAA TATACATATG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss38308691 NES09538043 PERLEGEN MM_PANEL2 f SNP T T T T T T C T T C T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs28143467 SNP T T T T T T C T T C T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38308691 NES09538043 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:102341511 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pde4b phosphodiesterase 4B, cAMP specific Intron
Noncoding-Transcript-Variant
Rr596250 regulatory region 596250 617 bp distal
Rr596251 regulatory region 596251 575 bp proximal
Rr596252 regulatory region 596252 683 bp proximal
Rr596253 regulatory region 596253 868 bp proximal
Rr596254 regulatory region 596254 1858 bp proximal
Rr596255 regulatory region 596255 1953 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory