rs28143465 SNP Detail

Summary

• ID
  rs28143465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102342161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGAGGCA TTGGGAAGGT
  GCCCGTCCCA GACCACTGGG CTTCTGAGAA GATCCGTCTA TGGAGCACAT AGTAAGTGGC
  TGCAGCACCT GCTTGGCCCT TTGCCTAGGG CTCCTCATGT GCAGCTTTCT ATCAGCCTTT
  GTATGGAGTC TGAAAGCAGC TTTGATCAAC AGTCTCTAGG GTGGCACCAT ACTCCCTCAT
  Y
  TGGTTCCAAG GGAAGCCAGA GTTCAAGGCA GTCTGCTGCC TCCTTCTGGC TTTTTCAAGA
  AGGTACTTTG TGTCCCTGGA GAATCATTCA GGAGTGGCCA TAGACTGACT CTTACATACC
  AAAAACAACT TTTGATAGAA AAGAAATGGC ATTCCATTAC CCAGTATGCC ATTGTGTAAC
  TGAGAGTGAA AACGGCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38308689	NES09537989	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	T		C	C	C	C		C
ss321233791	CHEV_4_102157569	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28143465					SNP	C	C	T	C	C	C	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308689	NES09537989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102342161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596250	regulatory region 596250			1267 bp distal
Rr596251	regulatory region 596251			within coordinates
Rr596252	regulatory region 596252			33 bp proximal
Rr596253	regulatory region 596253			218 bp proximal
Rr596254	regulatory region 596254			1208 bp proximal
Rr596255	regulatory region 596255			1303 bp proximal