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rs28143465 SNP Detail
Summary
  • ID
    rs28143465
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:102342161 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCTGAGGCA TTGGGAAGGT
    GCCCGTCCCA GACCACTGGG CTTCTGAGAA GATCCGTCTA TGGAGCACAT AGTAAGTGGC
    TGCAGCACCT GCTTGGCCCT TTGCCTAGGG CTCCTCATGT GCAGCTTTCT ATCAGCCTTT
    GTATGGAGTC TGAAAGCAGC TTTGATCAAC AGTCTCTAGG GTGGCACCAT ACTCCCTCAT
    Y
    TGGTTCCAAG GGAAGCCAGA GTTCAAGGCA GTCTGCTGCC TCCTTCTGGC TTTTTCAAGA
    AGGTACTTTG TGTCCCTGGA GAATCATTCA GGAGTGGCCA TAGACTGACT CTTACATACC
    AAAAACAACT TTTGATAGAA AAGAAATGGC ATTCCATTAC CCAGTATGCC ATTGTGTAAC
    TGAGAGTGAA AACGGCTGTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss38308689 NES09537989 PERLEGEN MM_PANEL2 f SNP C C T C C C T C T C C C C C
ss321233791 CHEV_4_102157569 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs28143465 SNP C C T C C C T C T T C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38308689 NES09537989 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:102342161 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pde4b phosphodiesterase 4B, cAMP specific Intron
Noncoding-Transcript-Variant
Rr596250 regulatory region 596250 1267 bp distal
Rr596251 regulatory region 596251 within coordinates
Rr596252 regulatory region 596252 33 bp proximal
Rr596253 regulatory region 596253 218 bp proximal
Rr596254 regulatory region 596254 1208 bp proximal
Rr596255 regulatory region 596255 1303 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory