rs28143460 SNP Detail

Summary

• ID
  rs28143460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102343626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTCCCC ATACCTCTCC
  CACAGTCTCT CAGCAGTGAG AGACAGCAGG GGGCAGTGTG TGCCTGAGAG AAACTGAGCA
  AGGTGGGCTC TGTCTATTTG AAGCTAAGTG GAGCTGTGCA TCTGGGAAGA AAAACATCTG
  AGATGATTAA AGCAAACTGG GGAAAGACAC ACTGCTCTAC AGTGCTAGCA AGCTGGGGCA
  R
  AAACAAGACA CAAAAAACAC ATAGCTCTTG TTTATGTTCA AGATACCAAA CTTCTAAAAT
  AGCACTGGGC TTGAAGGTTC CTTCCTGGGT AAGGGGCACT GATCAGAATC TCCCTGCCCT
  CGGCTGTGAC AGCCTGTGAT GGGATTCTTC TCAGCTCAGC AGCCTGGGAC AGTAATTTGG
  TGTTATCAGA TTAATTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38308684	NES09537881	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A		G	G	G	G		G
ss321233802	CHEV_4_102159034	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28143460					SNP	G	G	A	G	G	G	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38308684	NES09537881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102343626 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596251	regulatory region 596251			1358 bp distal
Rr596252	regulatory region 596252			1411 bp distal
Rr596253	regulatory region 596253			1226 bp distal
Rr596254	regulatory region 596254			within coordinates
Rr596255	regulatory region 596255			141 bp distal
Rr596256	regulatory region 596256			1757 bp proximal