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rs28143456 SNP Detail
Summary
  • ID
    rs28143456
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:102344033 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGCTAAA TTTACATATG
    AATATTAAAT ATCAGGCTGG GCTTCTCTAA TCAGACAGCC AGTGTTTTCA GGGTAACACT
    TTGTTCCCAA AACATTCAGA AATATGCAAA TTGGATTCTT TAATGAGGCT GATATTTATG
    TAAGGGAGAA GTCTTCCAGC TAGGAAGACG CCTTCCCATG ATATTTTTGT CTGACACCTA
    R
    AGCTATGCTA GATGCTTCCC TCTGGAGCTG CTCATTATCA ACAACATTAT TTATTTATTT
    ATTTTCCGCT TTCCATTCTG ACTCTGTGAC AGTCGGTCTG GCTGTGGCGA GGTCATAAGA
    TCTGCCCTCT GGTCCAAATT CTGGGTTGCT ATTTATTAAT AGTAAACCTG GGTAATGAGT
    AGAGTATGCG GAACTTGGTT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
ss38308680 NES09537890 PERLEGEN MM_PANEL2 f SNP A A G A A A G A G G A G A
ss321233805 CHEV_4_102159441 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
SM/J
WSB/EiJ
rs28143456 SNP A A G A A A G A G G G A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38308680 NES09537890 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:102344033 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pde4b phosphodiesterase 4B, cAMP specific Intron
Noncoding-Transcript-Variant
Rr596251 regulatory region 596251 1765 bp distal
Rr596252 regulatory region 596252 1818 bp distal
Rr596253 regulatory region 596253 1633 bp distal
Rr596254 regulatory region 596254 within coordinates
Rr596255 regulatory region 596255 548 bp distal
Rr596256 regulatory region 596256 1350 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory