rs28141796 SNP Detail

Summary

• ID
  rs28141796
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91368750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATATATTG TAGTTTTTCA
  TGAGATACTT TTTGCACACT CTTTTCATCT TGCTATAGTT ATCAATAGTG CCTTCTCTCA
  TGATCAGAGT TCTGCCCATC CTGATCTTAA TCCTTAGAGC ATTGAACAAT GTATATGACT
  GCACCATTAT GATAGGGCAG GTGGAGAAGA ATCAAGCAAG ATAGAATGAA TATTCCTTTT
  W
  CTTACATTCT TCCAGCTAAG TCAGAAGATT GTATTAGAAT TGTATAAAAT TAGAGCTGCA
  ATATTTTATC TCATTAATTT TTGTGTCACT TGAACAATGT GTATTCTCTT TAGTCTTGGT
  CTAACAGTAT TGTGAGGCAG CATTTACATC ATTATTCAAG GACACTAACT GGACAGACAC
  ACATTGTGTA ACTCAATACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss38268821	NES09573859	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs28141796					SNP	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38268821	NES09573859	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91368750 () rs orientation: forward

Symbol	Name	Function Class
Rr595271	regulatory region 595271	1463 bp proximal