rs28141782 SNP Detail

Summary

• ID
  rs28141782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91372474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGTGGC TTTTTTGGGG
  GGGGAGGGGG GAACTTCAGC TTACAGTTCC CCCTATTGGA CAGCCATCAT ATTTTGTGCT
  TGGAGAGGCC AAATGGTTTT TGTGTTACAA TTCTAGATAG TCTTGTTCGT TCCTAGAATC
  TGCTAAGGAT GAGGCTGACT AGGTAGGGCA GCAGTCTTCA GGAGTGTGAA GTAGTCGGCA
  R
  TGCTAAGAGG AAAGTGCCCT CTGGATCATA CTAACATTCT TAGTGATCAT ATCTAGGTTT
  GGCTTTTTTC TTTTTCTATC CACTGCATTG ATATGGCGTT TACATGTAAC ATGTAATAGC
  AGTGTTACCA CTAAAGTTAA GGCAACCAAC AACAAAATAT GTCTTCAAAA AGTAACAGTA
  GTAGATAAGG GAAGCACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38268807	NES09573745	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G		A	G	G	G	A	G	G	A	G
ss45727790	mCV24374381	ABI	CRAMUS_MOUSE	f	SNP		A				G
ss146985425	ENSMUSSNP4756144	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28141782					SNP	A	A	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38268807	NES09573745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91372474 () rs orientation: forward

Symbol	Name	Function Class
Rr595271	regulatory region 595271	1956 bp distal