rs28139752 SNP Detail

Summary

• ID
  rs28139752
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103105696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCCAA ATAGATTGAT
  GGATGAGTTC TTTCAAACTT TCATGTAGGA AACAGACAAA CCAACTAACC AACCAACCAC
  AAAAGGAGCC TGTGTCAATT AACTTAAACA AACAAACAAC AAAACCCTTT TCAGTTGTTT
  ACATGATCAG GTGTAGTCTT AACATCAAAG CCTGAAAAGA TGATGTAAAA ACCTACACTC
  K
  AATCTCATAA TGTTAGGATT TTTTTTATAA GACATGTAGA GTGCTAAATA ACATGCTAAT
  TAACAGTATA CATTTTTTTT TTTTTTTCGA GACAGGGTTT CTCTGTATAG CCCTGGCTGT
  CCTGGAACTT CAAATGAAGT TATATGAATG CAAGGTCTCT AAGAGATAAT GTTTTTTATA
  ATTCATTTCC CGGTGAGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
ss38305571	NES09512555	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
rs28139752					SNP	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305571	NES09512555	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103105696 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	1358 bp proximal