rs28139750 SNP Detail

Summary

• ID
  rs28139750
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103105918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATAAG ACATGTAGAG
  TGCTAAATAA CATGCTAATT AACAGTATAC ATTTTTTTTT TTTTTTCGAG ACAGGGTTTC
  TCTGTATAGC CCTGGCTGTC CTGGAACTTC AAATGAAGTT ATATGAATGC AAGGTCTCTA
  AGAGATAATG TTTTTTATAA TTCATTTCCC GGTGAGCTAA AATGGCAGGA AAATGATGTA
  W
  TGTTTTGGTT ACTGTTTCAG TATTTGCTTG CTTGCATGCT TGAGAAAGGG TCTTCTTGTG
  TGACCCAGGC TGGCTTTGCT GTTGCAGTCC TCTTGCCTCT CCTGTGCTGG GATGACAGGC
  AGGTACCACC ACGCCAGGTC CAACATACTA TAAATAGTAT ACTCAATAGC AACAATACTA
  TAAATGGGTC TGTGTTTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss38305569	NES09512559	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs28139750					SNP	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305569	NES09512559	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103105918 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	1136 bp proximal