rs28139749 SNP Detail

Summary

• ID
  rs28139749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103106110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATGTAAT GTTTTGGTTA
  CTGTTTCAGT ATTTGCTTGC TTGCATGCTT GAGAAAGGGT CTTCTTGTGT GACCCAGGCT
  GGCTTTGCTG TTGCAGTCCT CTTGCCTCTC CTGTGCTGGG ATGACAGGCA GGTACCACCA
  CGCCAGGTCC AACATACTAT AAATAGTATA CTCAATAGCA ACAATACTAT AAATGGGTCT
  R
  TGTTTAGATG AAACCACTAT TACAAATAGA ACCACCATAA ATCTATACGA TATAACTATT
  TTAACACAAT TTTAAAGTTT ATGACTGTAA AACTAACAAC CAATAGCGTA GCTGAGACAA
  TGAACCCAGT AGTCTATGAA CTGCTGAGAC TGACACCCAA CTGGGTCTAT GACTGCAGCT
  CCTTGAGAGA CTAAGGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38305568	NES09512511	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	A
ss147139489	ENSMUSSNP39427	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss321236281	CHEV_4_102921518	CHEVERUD	SCREENING_POP	f	SNP							A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs28139749					SNP	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305568	NES09512511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103106110 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	944 bp proximal