rs28139745 SNP Detail

Summary

• ID
  rs28139745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103107050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATAGCA CACACACACA
  CACACACACA CACACACACA CAGACACACA CACACACACA CACACACACA CACACACACA
  CACACAGACA CACACACACA CACACACACA AACACACACT TCCCTCTCTC TCTCCTCTCA
  TTTAGCAGAG TGAAAGAAAA TAGTGAGAAA GATAAACCAC TGAATTCGGT CTCAGTGATT
  K
  GAAGAGAGTG AAGTTGGCGT TTATATGAGG TTTCACTGGA CGGCAGGCTG CAGCTGGCCT
  TGAGCATACA CCTGATAGTA AAGCCACTGG CCAGGAAAAA GCAGGACAGA GTTCAGGGCA
  ACCAAAGCTG CTGGAAGGTG ATGGGGGAAG GCTAGGAAGA GAAAGCCAAC AGGACGGTTT
  CTGACCAAGT CTCTGGCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305564	NES09512373	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28139745					SNP	T	T	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305564	NES09512373	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103107050 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr376942	regulatory region 376942	within coordinates
Rr596380	regulatory region 596380	4 bp proximal