rs28139704 SNP Detail

Summary

• ID
  rs28139704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103120881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAAAG AACACTGTTT
  TAACTTGACA GGCAAAGCTT AGTGGGTTGA GCAAAAAAAA CTAAAGCAGT TGATGAAGCT
  GTCTCTGACA TCAAGGATAG AGGAGAACCT TCTCGTTGAC CTGCTCTCCT GTGCCTCCTG
  GCTCCTTAGC CTTCCTGGCC CTGAGCAGCT TTCCACTTTC TGACTGTTTC TGCTCCTCTG
  Y
  GTAGCTGGCT GCTGTTATAA ATGGGCTCTG ACTTACACAG CTTCCCTTGC TGCTCAGACG
  CTGAGCTAAC CACTATATGC CCGGCTGCAG ATGCTGTATT TCTTGTGAGG CCAATATGAG
  TTATTATGAA CAATAGGAAA GAATAGGAAT CAGATATGGG TCCTTTGTAT TCTAGTATGA
  GAACATATTC ATACTTGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305523	NES09511553	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28139704					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305523	NES09511553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103120881 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr596382	regulatory region 596382	within coordinates
Rr596383	regulatory region 596383	1572 bp proximal