rs28139703 SNP Detail

Summary

• ID
  rs28139703
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103120984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCTTCT CGTTGACCTG
  CTCTCCTGTG CCTCCTGGCT CCTTAGCCTT CCTGGCCCTG AGCAGCTTTC CACTTTCTGA
  CTGTTTCTGC TCCTCTGCGT AGCTGGCTGC TGTTATAAAT GGGCTCTGAC TTACACAGCT
  TCCCTTGCTG CTCAGACGCT GAGCTAACCA CTATATGCCC GGCTGCAGAT GCTGTATTTC
  W
  TGTGAGGCCA ATATGAGTTA TTATGAACAA TAGGAAAGAA TAGGAATCAG ATATGGGTCC
  TTTGTATTCT AGTATGAGAA CATATTCATA CTTGCTATCA TGCATTAGAA GCAGCGCAGC
  CAGGCACACT GCTCATGCTT TGTTTGTTCT GAGTTAACCT TTCATGTAGA TATAGCCCGG
  GTGATGACTC AGGAAAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38305522	NES09511556	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28139703					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38305522	NES09511556	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103120984 () rs orientation: forward

Symbol	Name	Function Class
4921539E11Rik	RIKEN cDNA 4921539E11 gene	Intron
Rr596382	regulatory region 596382	within coordinates
Rr596383	regulatory region 596383	1469 bp proximal