rs28138167 SNP Detail

Summary

• ID
  rs28138167
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104158596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATGTGC TTTTAAGAGA
  ACCGTGTGAA AGGTTCTTGT TTGCCGTTGT GATTTTAGGC AAGCAACTTT TCTACCTGGG
  TCTGTTCCAG GGTTTGGGAA AAACAGGACT AGTCGTTTTC TCTAAGGATG GGTGTGCTGG
  TCAAAAGACC AAAATACAGT GAAGGCTCTT TGTAGAGTGT GAAATGATTC ATAAACTTGC
  W
  TCTGGAACTT ACTAGAATTT TCAGTCTCCT GGGTCCTGTT TTAGACTCTC CTCCTGGACA
  ATATCATCCT CACAGCTACC TCAAGGTACA GATCTATTTA TCTGAGAATA ACAAAGGCCC
  ACATGCCCTT GAGAAGCCAA ATGGCAGAGT TAGTCTACGT TGACCAGCCT TGCAGGTTCT
  TTGTCACAAT GCAAGGTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38300486	NES09497895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28138167					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38300486	NES09497895	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104158596 () rs orientation: forward

Symbol	Name	Function Class
Dab1	disabled 1	Intron
Rr596447	regulatory region 596447	1672 bp proximal