rs28138162 SNP Detail

Summary

• ID
  rs28138162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104159079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTATGT TTTATTTCAT
  GAAATAAGAC ATTTGAATAT TATCTGCATC ATAATGATAT TTTTCAGAAT TTTACTAGAA
  ATAGAATTTT TTTCTGAGCT CATCATAATA CAATAATGAT TCCTTCCTTT CATGCATTCC
  CTTGTCTACT CTATACCTAC TATGTGTTGG TCTTGGCACC AACCAATTGT TAACGGAACA
  R
  AAATGAAAAG ACTCAATTTC CTGAGTACAA TACAACTTCA GAGTGGACTT GGTAACAATA
  GTGGCATTGT CTGACACTGG GGTAAGCAGA ACCGCACACA CCGTTTTTTT TTTTTTTTTT
  TTTTTGTGGG AACTAGAACT AGGGAAACTT TAATAAGACA GGAAGGACCT TGCATGGGAA
  AGGCTACTTA AAACTAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38300481	NES09497901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28138162					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38300481	NES09497901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104159079 () rs orientation: forward

Symbol	Name	Function Class
Dab1	disabled 1	Intron
Rr596447	regulatory region 596447	1189 bp proximal