rs28138149 SNP Detail

Summary

• ID
  rs28138149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:104161507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATACAC ACTCCTGCAT
  GCACTCACAC ACAGAAAGAG TAAGCTTTTG GCCCATGTTA AAAATTAAAA ATGAGAAAGC
  TGAAGATTAG ACATTGGGAT AGCTCAGTCA AATAGCAGAA ATATACACAA AGCCTCTGAT
  CACAAACACA GGTGATGTTG ATTTCAGGAA AACAACTGCC CACGCAGGGG TGCTTGCTAA
  Y
  GGGGAAGCTT GGCAGTGTGG TGACTGCCTC AATGGGAAGG CACATTGGTG TTTGTGTCTG
  GGTGGTGACT GCATCAGCCT GCCATCCCTC CCTTCTTATC CCGTGCTTTG CTTTCTCTCA
  CTCCATCCCT TCCCCTGAGT ACTCTCACAG CTTCCACGTA CTTTCAGGAT TTGTGTACTT
  GGTGTTGAGA ATGTGGCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38300468	NES09497820	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28138149					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38300468	NES09497820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104161507 () rs orientation: forward

Symbol	Name	Function Class
Dab1	disabled 1	Intron
Rr596447	regulatory region 596447	625 bp distal