rs28136208 SNP Detail

Summary

• ID
  rs28136208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:105021228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCTAG GATTTTGTTA
  TGAGCAGTAC CAACATTATA TGTTTAGTCT TTGTCAGAAA AACAGCTCTC TCTGAAGGAG
  CGAGCACTTA GGGGAGAGCC ACTGGGATGT GAGCTTCCCC CCACCCCCCT AGTGATGAGA
  GCTTCATCAC ACTATGTGAT CTAACTCCTG GGGCCTCATT TCTCATCCAT ACAAACTGGG
  R
  TAGTGTGGCC ATGGGAGCCC AATGTCCTGT TCAGTGTGGC CGCCAGAGGC CTGGGCTGGC
  TAGTAATTGC CAAGGGGTCA TAAAAGAGCA GGAGGAGAAA CAAGGTTTTG CCTTTCTGAT
  ATTGGTGTAC GAAACTGGAT ACCTTTCATG TGGCACTCAC TGCTCCGAGA GTCTTCTGCT
  ATTTCCCTTG CGTATGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38295632	NES09512252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28136208					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295632	NES09512252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105021228 () rs orientation: forward

Symbol	Name	Function Class
Plpp3	phospholipid phosphatase 3	Intron
Rr596546	regulatory region 596546	1773 bp distal
Rr596547	regulatory region 596547	within coordinates
Rr596548	regulatory region 596548	999 bp proximal
Tssr1250	transcription start site region 1250	1839 bp upstream