rs28136197 SNP Detail

Summary

• ID
  rs28136197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:105021949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATTAA AGGCGTGCGC
  CACCACTGCC CGGCCAGACA TCACCTTTTG TGACGTACCC CAGGAGGACA GAAGAGGGGC
  TCACGTCTTC AAAGCTCGTG CTTTTTTAAA TGCCTCTGAG CGGTTCCTGA GGTAGAAGTC
  ATTCCCCACA GCTGATGGGT GAAACGGAGT CTGGGACTAA ATGACTTTCT GAAGATCATA
  Y
  GCTGAATGAA AGTGTTCACT CAAAACCAAG GGAGGCCGTA TCTTTGAATG TCCTCTTGGT
  ACTATTGTTC ACTTAGGGCC AGGTGAATGC GTAAGTTAGG ATCTGCACTG ATATCCCCAA
  AGGTAAAACA CAACAAACAG TATGGGTAAG AGTGGTCCCC ACGGGCAGGT CTTTGAAAGA
  TACAGTTGAT TTTTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38295621	NES09512148	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28136197					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295621	NES09512148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105021949 () rs orientation: forward

Symbol	Name	Function Class
Plpp3	phospholipid phosphatase 3	Intron
Rr596547	regulatory region 596547	320 bp distal
Rr596548	regulatory region 596548	278 bp proximal
Tssr1250	transcription start site region 1250	1118 bp upstream