rs28135925 SNP Detail

Summary

• ID
  rs28135925
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106019976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACAACCA CATTCTTCAG
  AGGAATGAGG TGGACAGGAG GTGGATGTCA CCCAGTAAAT CTCTCACACA CTAGGGGAGA
  GTTGCCACAG TTGAAAAACA GATCAGATCT GCTATTGGTG GGATAAAAGC CAGAGCCAGA
  ATGAAGGGAT GGGTGGGGCC CAAGCAAGTG CTTGACTAGC AGGGAACAAG CAAAGCCAAC
  W
  CACAGGATTG TTTTTCTCCC TTTAGTGTTG GCAGACGAGA GCCTCTGGGG AAGACATTCA
  GATCAGATAA AGGTGACATA AGGAAGGGAT GGAGCTGTAG AATGCCTAAC CTAAGAAGTC
  AAAATGCAGT AAGTTGGAAC CTTTGGGACA GTTCATTCTC AGTGAAGACA GAGAAAACAA
  ATTTGTTGTC CATCTAGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38290654	NES09495571	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28135925					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38290654	NES09495571	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106019976 () rs orientation: forward

Symbol	Name	Function Class
Gm12729	predicted gene 12729	within coordinates
Rr596692	regulatory region 596692	922 bp distal
Rr596693	regulatory region 596693	972 bp distal