rs28135338 SNP Detail

Summary

• ID
  rs28135338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106485901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCGACCCA CAGGGCCAGA
  AGTCATGACA AAGGGACAGC AGGGAACTTG AAGTCCTTTA GGTGGAATTC TCTAGGGAAC
  CCAGGATGAT GACAGACACT CACTCCCAAG GTGTCACACC CAATCCCTAA ACTTCCCCCA
  CCAGTCCGTT TGCTACCCTG CCACAAGCTT TCTGGAGGCT GGCTCAGTGA CCTTCTGGGA
  Y
  CCCTGGTTGG AGCAGAGGAC CTCAAGTTTC TGTTATTCCA CACACCTGCT GAGGCAGGGA
  AGCGAGAACA CTAGTACCCC CAGCAGAGCT GGAAGGACTT CTTCCTGTCC TGTCCCTGTG
  CTCTGGCCCG GTCTGTCACC ACGGAAGACA TTCCAGTTGC GCCAGAAGGA CACATTCCTA
  GGCAGGTCTG ACACCTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288665	NES09622687	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T	C	C	C	T	C	C		C	T	C	C
ss147169387	ENSMUSSNP6914241	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28135338					SNP	T	T	T	T	C	T	C	C	C	T	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288665	NES09622687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106485901 () rs orientation: forward

Symbol	Name	Function Class
Rr596781	regulatory region 596781	within coordinates
Rr596782	regulatory region 596782	1597 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron