rs28135331 SNP Detail

Summary

• ID
  rs28135331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106486622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCCTGAGT TAACACAAAC CTGCCCTGTG ACAGTGCATC
  CTCTCCCAGT ACTGCCAGGT CACCTGCCAA TGTCCCTTAC CCACCAGCCA CAGAAGCAGG
  R
  TCTTCAGGCT TCCCGGAGGA GAAGGGTCTG ATCCTTTGGC CCATTAAAAA AGTACCAGCC
  CACTTTCACG CCACCCCCGA TCAGTCCAGC CAATGGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38288658	NES09622667	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28135331					SNP	A	A	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288658	NES09622667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106486622 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	1571 bp upstream
Rr596781	regulatory region 596781	within coordinates
Rr596782	regulatory region 596782	876 bp proximal
Rr596783	regulatory region 596783	1700 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron