rs28135325 SNP Detail

Summary

• ID
  rs28135325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106487447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGGAG GGTGGGGCTG
  GGGGTAAAGA ATACCAGGAG GAAGTCTCAG TCCTGGCTTT GGGGACACTA CCCTGCCTCA
  GTTTCCCCAC TTTCCCTTCC ACACAGGACA TTCTGAAGCC CTAATTAAGC TCAATGTGCT
  TTGCAAATGG TAGCCACTGT TTAAACCCTA GCTCTTTGTG GTTCGATACT GTGGGGGAAA
  Y
  GTGAACTTGA AGTCAGAGGT GGCCTGAAAA AGCGGGTGAC GCCAGGAGCC TCCATAGCTT
  TATGCCAGCT TCCCCCATCT CAGGAGGAAC AAGAGAGATT CAGAGGATCC TGAGGCTGGT
  GCTCAGGGAA GCCCTAGAGT CATCTGTCAC TCTCACCTGT ACCTCGTTAG TCCCAGGGTC
  ACTGTACACT CAGGCTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288652	NES09622645	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28135325					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288652	NES09622645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106487447 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	746 bp upstream
Rr596781	regulatory region 596781	567 bp distal
Rr596782	regulatory region 596782	51 bp proximal
Rr596783	regulatory region 596783	875 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron