rs28135323 SNP Detail

Summary

• ID
  rs28135323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106487623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTTCGA TACTGTGGGG
  GAAACGTGAA CTTGAAGTCA GAGGTGGCCT GAAAAAGCGG GTGACGCCAG GAGCCTCCAT
  AGCTTTATGC CAGCTTCCCC CATCTCAGGA GGAACAAGAG AGATTCAGAG GATCCTGAGG
  CTGGTGCTCA GGGAAGCCCT AGAGTCATCT GTCACTCTCA CCTGTACCTC GTTAGTCCCA
  R
  GGTCACTGTA CACTCAGGCT GGGTCTCATG TGATCCCTTC CTGAGAATCG AGGCCAGCCT
  GTAGCTAAGG CTCTGGTGCT GGCTGGCCAC TGTCAGAGCA TCAGGGCACT GATGATGATT
  GAGCACGGAG TGTCCCACAC AGAGCCCGTG CCGAGCAGTC CCAGAAACTC CTTCCAGAGT
  GCTCTCAGCC TTTGCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288650	NES09622647	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28135323					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288650	NES09622647	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106487623 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	570 bp upstream
Rr596781	regulatory region 596781	743 bp distal
Rr596782	regulatory region 596782	within coordinates
Rr596783	regulatory region 596783	699 bp proximal
Rr596784	regulatory region 596784	1949 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron