rs28135315 SNP Detail

Summary

• ID
  rs28135315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106488340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTAACC CCGTCTGTAA
  TTCAGAAGCC AGCCTGAAGC CCACTCACAA GTATGATCTG CTACATTTGA GATTCGTCAC
  GTGTCATATT CAAATAGCTA CATTTTGGAA ATGTCAGTTT AGCCTCCAAA TTTGGAAGGC
  AGGGAAAGAG AAGAACCTAG GAACTGCTCC TGCAATTCAG GGATAGTTCC ACCAGGTGGC
  R
  ATGTTGCTTC CATCATGAAA ACCGTAACTG GGTTATAAAC TCTAGAATGT TGACGGTGAG
  CAGAGTGGTG GGGGAAGGAC TCATTTGTAA ACCTTGATAT TATCTCACAT GGAGTTATTC
  CGCCTCTCTG GTCTCAGTGT TCCTGGATAT AGAATAAGGA GATCAATAAC AGTGTTGAGG
  AAAAGACTGG AGGCTAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38288642	NES09622655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28135315					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288642	NES09622655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106488340 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	within coordinates
Rr596781	regulatory region 596781	1460 bp distal
Rr596782	regulatory region 596782	within coordinates
Rr596783	regulatory region 596783	within coordinates
Rr596784	regulatory region 596784	1232 bp proximal
Rr596785	regulatory region 596785	1956 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron