rs28135310 SNP Detail

Summary

• ID
  rs28135310
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106488743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACATAGCA AATGGGCTAC CATGGGCTAC ACAACAAGTC
  CAGGACTAGG CTACATACTG ACTGAGATAC TGTCTCAAAA CAAAACATAA TTGGGGTCCT
  S
  TGGAAGTAAG AAAGATGCCT TGTAGCCCTA GAGAAGGGGG AATGGGGAGA GGTGGGATAT
  CTTCAGGCTC TAGGCCCTGA AATCCTATGG CTCTTTGGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss38288637	NES09622633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs28135310					SNP	G	G	G	C	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38288637	NES09622633	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106488743 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	250 bp downstream
Rr596781	regulatory region 596781	1863 bp distal
Rr596782	regulatory region 596782	198 bp distal
Rr596783	regulatory region 596783	398 bp distal
Rr596784	regulatory region 596784	829 bp proximal
Rr596785	regulatory region 596785	1553 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron