rs28133068 SNP Detail

Summary

• ID
  rs28133068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106292255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCACATA AAATAAATAA
  ATCTTTTTTT TTTTTTTAAA GTAGCATATG TTTCAAAATG TGATTGAATG AGAATATTTT
  CAAAAGAATA TTTGTTTAAT AAGAATCCCT TTGTTCTGCA GGTGCCCTGC TGCTAAAGAA
  TACTTCAAAG AGAACTCCCA CCACTGGAGC TGGGCTGTGC AGTGGTTACA GAAGAAGGTA
  Y
  TAGAAGTCTG AGCATTCCTG CTCTAAGCAT AGGCATCCAA AGCGACACAT CTTACCTGAG
  AAAGAATTCT TTTCCTAAAC TTAATTTGCA GAATTACCCC AAACTATTTT CAGATGTCAA
  ATATTTATTT TTTTAGATAT TATTATTATT ATTAATTGTT TGTGTATGTA TGTGCATGCA
  AGTGTTAGTG CCTATGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38289491	NES09514326	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28133068					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38289491	NES09514326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106292255 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr596735	regulatory region 596735			1607 bp proximal
Usp24	ubiquitin specific peptidase 24			Intron
				Splice-Site