rs28133057 SNP Detail

Summary

• ID
  rs28133057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106295556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACCCAT TTCTTTATGT
  TCTGTGCTCT CTGTGAGAAT CTTCTGCTTG TACTGTGGCT GTTTTCATGT CACATTCTGA
  AACTTCTCAG TGGTCTTCCT TTGCCTTCAG GATTCTCCAT GTGTGCTGCT TGACTTGACC
  TCACAGACCT CACTTCACAG TGTTGGCTTT TAGTTTATCA GACATGCTTG TTCCTTCCAC
  R
  GGGGAATGTC TCTTCTTCTC CTCATTCCTA CCTCAAGTGG GAGTAGTCCC AAGACATGGG
  CTGGGTCTTC AAAACCAATT ATTAAACATA TAAACCAAAT CCAGCCCACT CGGTTACAGA
  AGGAATGACC TAACGGGTAA GGAGTCACTG TGTGGTGCGG AGAAGGAAGT GCAGCCTGAG
  GCAATAGTAA TGAACCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38289480	NES09514157	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28133057					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38289480	NES09514157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106295556 () rs orientation: forward

Symbol	Name	Function Class
Rr596735	regulatory region 596735	1673 bp distal
Usp24	ubiquitin specific peptidase 24	Intron