rs28132320 SNP Detail

Summary

• ID
  rs28132320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGTGTC TTGGTACAAA
  GTCATTGGTC GACACCTCGA GGCCAGTGGT GAGATGCCAC CATCCCCTCC CACACACGTT
  CCTGCAGTGA TCAAAGATTA TGGAGTTCTC CCAAGCCCTT ACCTGCCCCA GTCCCTCCTT
  GTTTATCAGG GTGGCTGGTG TGGAGTGACA GTATGACACT CAGAGGCAGG CTGTTGGAGG
  R
  TGTGAGGAAA GAAACAGCCA TGAGACATTC CCAGCCAAAG TCAAGGAAGT CTCAACTCTC
  TCTTCTACCT GCTGGGCCCT CAGCCTGCAA ATAGTCCCCA GACACAGGGA TCCTGAGATG
  AGAGTCTCTG GCAAGCAAGC TCAGCCCCTG GCATTCACAG GCACAGAAAC CTCCCCCACC
  CCCACCCCAG CCCCCTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38283642	NES09508381	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A		G	G	A		G
ss321250573	CHEV_4_107405808	CHEVERUD	SCREENING_POP	f	SNP							G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28132320					SNP	A	A	G	A	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283642	NES09508381	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590400 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	268 bp proximal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	123 bp proximal
Rr597051	regulatory region 597051	1397 bp distal
Rr597052	regulatory region 597052	within coordinates
Rr597053	regulatory region 597053	558 bp proximal