rs28132318 SNP Detail

Summary

• ID
  rs28132318
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGATTA TGGAGTTCTC
  CCAAGCCCTT ACCTGCCCCA GTCCCTCCTT GTTTATCAGG GTGGCTGGTG TGGAGTGACA
  GTATGACACT CAGAGGCAGG CTGTTGGAGG ATGTGAGGAA AGAAACAGCC ATGAGACATT
  CCCAGCCAAA GTCAAGGAAG TCTCAACTCT CTCTTCTACC TGCTGGGCCC TCAGCCTGCA
  M
  ATAGTCCCCA GACACAGGGA TCCTGAGATG AGAGTCTCTG GCAAGCAAGC TCAGCCCCTG
  GCATTCACAG GCACAGAAAC CTCCCCCACC CCCACCCCAG CCCCCTATTT AACAGGGTTT
  CACCCAGGAG CCCACCCTCA CCTGCTTTGG AGAGATTGCT TTGGGATCCC CAGGGGAAGG
  AGAGAAGCCC TTATGCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss38283640	NES09508383	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	A	A	A		A	A
ss321250575	CHEV_4_107405898	CHEVERUD	SCREENING_POP	f	SNP									A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs28132318					SNP	A	A	C	A	C	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283640	NES09508383	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590490 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	178 bp proximal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	33 bp proximal
Rr597051	regulatory region 597051	1487 bp distal
Rr597052	regulatory region 597052	within coordinates
Rr597053	regulatory region 597053	468 bp proximal