rs28132316 SNP Detail

Summary

• ID
  rs28132316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACACA GGGATCCTGA
  GATGAGAGTC TCTGGCAAGC AAGCTCAGCC CCTGGCATTC ACAGGCACAG AAACCTCCCC
  CACCCCCACC CCAGCCCCCT ATTTAACAGG GTTTCACCCA GGAGCCCACC CTCACCTGCT
  TTGGAGAGAT TGCTTTGGGA TCCCCAGGGG AAGGAGAGAA GCCCTTATGC CAAGCAAATG
  R
  TTGAGTGCTT TGGCGACACA CACGCGCGCG CACACACACA CACACACACA CACACACACA
  CACAGAGTCA GAACAGTACA GACATTAGCA TGGCCTCTGC ACAGGATGGC TGGCAAATCT
  ATGAAGGATT CCATAGGTAA GTAAAAAAAA GAAAGAAAAA CATGTATAGT TTGAGAATAA
  GCACAGTAGT ACCTGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss38283638	NES09508385	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A		G	G	A
ss321250578	CHEV_4_107406105	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28132316					SNP	A	A	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283638	NES09508385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590697 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	within coordinates
Rr597051	regulatory region 597051	1694 bp distal
Rr597052	regulatory region 597052	within coordinates
Rr597053	regulatory region 597053	261 bp proximal