rs28132315 SNP Detail

Summary

• ID
  rs28132315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGATG AGAGTCTCTG
  GCAAGCAAGC TCAGCCCCTG GCATTCACAG GCACAGAAAC CTCCCCCACC CCCACCCCAG
  CCCCCTATTT AACAGGGTTT CACCCAGGAG CCCACCCTCA CCTGCTTTGG AGAGATTGCT
  TTGGGATCCC CAGGGGAAGG AGAGAAGCCC TTATGCCAAG CAAATGATTG AGTGCTTTGG
  Y
  GACACACACG CGCGCGCACA CACACACACA CACACACACA CACACACACA GAGTCAGAAC
  AGTACAGACA TTAGCATGGC CTCTGCACAG GATGGCTGGC AAATCTATGA AGGATTCCAT
  AGGTAAGTAA AAAAAAGAAA GAAAAACATG TATAGTTTGA GAATAAGCAC AGTAGTACCT
  GAAGGAAATT CAGAAATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ
ss38283637	NES09508386	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ
rs28132315					SNP	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283637	NES09508386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590711 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	within coordinates
Rr597051	regulatory region 597051	1708 bp distal
Rr597052	regulatory region 597052	within coordinates
Rr597053	regulatory region 597053	247 bp proximal