rs28132314 SNP Detail

Summary

• ID
  rs28132314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107590908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGACACA CACGCGCGCG
  CACACACACA CACACACACA CACACACACA CACAGAGTCA GAACAGTACA GACATTAGCA
  TGGCCTCTGC ACAGGATGGC TGGCAAATCT ATGAAGGATT CCATAGGTAA GTAAAAAAAA
  GAAAGAAAAA CATGTATAGT TTGAGAATAA GCACAGTAGT ACCTGAAGGA AATTCAGAAA
  Y
  ACATTTGGAA AGGAAGGAAG TCAGGACAAA AGCGGGGAGC ACCCCTGGGG CAAAGCATTC
  AGAATGCCCT TTGTCCTTTG GGGTTTTAAG TTTTAGAACA CAGGACAGCG CTCCTTTGAT
  CTCAGAGGGG TGGCTTCCTT CTTGGAGACA ACTTGTTCCA CCAGCAGACA GTGGGGTGAG
  GAGCCCCAGG GGCAGTGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38283636	NES09508327	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T		T	C	T	T		C
ss321250581	CHEV_4_107406316	CHEVERUD	SCREENING_POP	f	SNP						T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28132314					SNP	T	T	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283636	NES09508327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107590908 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	127 bp distal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	within coordinates
Rr597051	regulatory region 597051	1905 bp distal
Rr597052	regulatory region 597052	87 bp distal
Rr597053	regulatory region 597053	50 bp proximal