rs28132309 SNP Detail

Summary

• ID
  rs28132309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107591428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCGCGT TGGTGTCCTC
  CCACGGCTGC CTTCGTCCTG TCTGGACAAG CAGGAGTTCC TGGTCCTCAA GCTCAGAGGA
  CAGCTTGCTT TCCTGTCCCC TTGCCCACAC ACTGAGCAGG CCTAACTCAG GAACAGCTGC
  GGGGAGGGAA GCCTGTGAAC TGGGTGGGCC TGGGAGTTTA GGTAAAGAGG TGAGAAGGGC
  Y
  GGGATGCTGG TGTGGACTTT GAAATGCATA ACAAGTAAGC GTGAAAAGGG ACTGAAGGTG
  TCTGGAGGGC AGCATGGGCT TTGATATGTA ACCAGGGAAG TGGCAGGCAG GTTCTTGGTG
  CTCTGTGTGA GCTTTGATCT CTCTGACAGC AGTCTCTCTA TGCTGTCTAG CTTGAGCTCA
  GCCAAGACTG TCTTTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss38283631	NES09508335	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T		C	T
ss321250587	CHEV_4_107406836	CHEVERUD	SCREENING_POP	f	SNP					C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs28132309					SNP	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283631	NES09508335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107591428 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	647 bp distal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	within coordinates
Rr597052	regulatory region 597052	607 bp distal
Rr597053	regulatory region 597053	244 bp distal