rs28132306 SNP Detail

Summary

• ID
  rs28132306
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107591621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGCTGG GATGCTGGTG
  TGGACTTTGA AATGCATAAC AAGTAAGCGT GAAAAGGGAC TGAAGGTGTC TGGAGGGCAG
  CATGGGCTTT GATATGTAAC CAGGGAAGTG GCAGGCAGGT TCTTGGTGCT CTGTGTGAGC
  TTTGATCTCT CTGACAGCAG TCTCTCTATG CTGTCTAGCT TGAGCTCAGC CAAGACTGTC
  K
  TTTGAGTTCC CATTTGGACC TGACACCAAC CTCCCTCTGG AAGGGGCTTC TGACACCCCC
  TTTTTCCCAG ACCCACTTTA TCCACATTGG GGTTTGGGGC TTGTTCTTTT GATTGGTTTT
  CGGTTTAATG TGGTTTTGAG ACAGGATCTC ACTGTGCATG CCAGGCTACT CTTGAGCCTG
  CTATGCATCC TAACCTGACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38283628	NES09508342	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	T		T	G	T	T
ss321250591	CHEV_4_107407029	CHEVERUD	SCREENING_POP	f	SNP							T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28132306					SNP	T	T	G	T	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283628	NES09508342	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107591621 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	840 bp distal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	within coordinates
Rr597052	regulatory region 597052	800 bp distal
Rr597053	regulatory region 597053	437 bp distal