rs28132271 SNP Detail

Summary

• ID
  rs28132271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107600458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAATACT AATTGCTGTT
  TATTAAAACC CAGTGCTAAA TGCTTAATCC TCACAAAAAC TTCATGAGGA GCAGACTGAG
  AGATCATGGC TCAGAGAAAC GAGTTCATTA TGTTCAAGGT CTCACACAGC GAGCTGGTGA
  CATCGCTGGG ACTCTATCTG CAACCGCTTC TTGCAGGTGT CAACTCTTCT CTGATTTGTT
  R
  GTCTAACAGA TGCTTATCCA GCCTTCTTTT TTCATAGGAA AACCAAGGGA CCAAGGTGGC
  TGGGGCAGGC TGAACAAGCC AGTCCTGAAC ATGACTAACC CCTGAGTGGT CCAGGAACTT
  GTCAAGCCAG AGCCTTGCAA AGGCTAACGT TCCATTCTGA AGGTCTCTGC TGTTTCCACA
  ACCACATTAA CCCTGCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38283591	NES09507742	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	G	G		A		G	G	A
ss147182579	ENSMUSSNP5006562	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G					A
ss321250709	CHEV_4_107415866	CHEVERUD	SCREENING_POP	f	SNP											A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28132271					SNP	G	G	G	G	G	G	A	G	G	G	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283591	NES09507742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107600458 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Rr597057	regulatory region 597057	1857 bp distal
Rr597058	regulatory region 597058	1847 bp proximal