rs28132263 SNP Detail

Summary

• ID
  rs28132263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107602130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCCATGT CTGGAGGTGA TGGAAGGGGA TTCAGGGGCA
  AAGCAAGCCC TCATATCAGT TGGCTCCTGC AAGGCTGGAA TGACTTCATA AAGTCTATTC
  R
  ACACATACTG CTCTCAAAAT CTTAAGGCCT TGAGTGAGAA TCTAAACGAC ACAGACTTTG
  AGATCTTTGG CAAACTGGGA TATTCCTAGG CTCCACGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss38283583	NES09507605	PERLEGEN	MM_PANEL2	f	SNP	G		G	G		A	G	G	A	G
ss45693637	mCV23106208	ABI	CRAMUS_MOUSE	f	SNP		G	G		G	A
ss147182613	ENSMUSSNP7085469	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs28132263					SNP	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283583	NES09507605	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107602130 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	649 bp downstream
Rr597058	regulatory region 597058	175 bp proximal